WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T10G3.5a.1 Sequence Name  T10G3.5a.1
Length (nt)  3921   Chromosome Location  V: 13491067-13497372
Chromosome . Primary Identifier  V Chromosome Location . Start  13491067
Chromosome Location . End  13497372 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T10G3.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011696 eea-1 T10G3.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T10G3.5a T10G3.5a 3618   V: 13491365-13491586

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T10G3.5a.1 13491067 13497372 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon204615   520   V: 13491067-13491586 Caenorhabditis elegans
Exon204617   176   V: 13491978-13492153 Caenorhabditis elegans
Exon204619   274   V: 13492202-13492475 Caenorhabditis elegans
Exon204621   264   V: 13492791-13493054 Caenorhabditis elegans
Exon204623   228   V: 13493102-13493329 Caenorhabditis elegans
Exon204625   330   V: 13493375-13493704 Caenorhabditis elegans
Exon204627   888   V: 13494725-13495612 Caenorhabditis elegans
Exon204629   75   V: 13495941-13496015 Caenorhabditis elegans
Exon204632   942   V: 13496110-13497051 Caenorhabditis elegans
Exon204633   174   V: 13497093-13497266 Caenorhabditis elegans
Exon204635   50   V: 13497323-13497372 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T10G3.5a.1 13491067 13497372 -1

1 Sequence

Length
3921

1 Sequence Ontology Term

Identifier Name Description
transcript