WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C56A3.3a.1 Sequence Name  C56A3.3a.1
Length (nt)  1850   Chromosome Location  V: 13531662-13536108
Chromosome . Primary Identifier  V Chromosome Location . Start  13531662
Chromosome Location . End  13536108 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C56A3.3a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008342 frpr-5 C56A3.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C56A3.3a C56A3.3a 1428   V: 13532027-13532182

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C56A3.3a.1 13531662 13536108 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon204744   521   V: 13531662-13532182 Caenorhabditis elegans
Exon204748   116   V: 13532239-13532354 Caenorhabditis elegans
Exon204751   79   V: 13532475-13532553 Caenorhabditis elegans
Exon204754   121   V: 13532608-13532728 Caenorhabditis elegans
Exon204757   155   V: 13532777-13532931 Caenorhabditis elegans
Exon204760   184   V: 13532982-13533165 Caenorhabditis elegans
Exon204763   209   V: 13533499-13533707 Caenorhabditis elegans
Exon204766   319   V: 13533763-13534081 Caenorhabditis elegans
Exon204769   93   V: 13534524-13534616 Caenorhabditis elegans
Exon204774   53   V: 13536056-13536108 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C56A3.3a.1 13531662 13536108 -1

1 Sequence

Length
1850

1 Sequence Ontology Term

Identifier Name Description
transcript