WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C56A3.7a.1 Sequence Name  C56A3.7a.1
Length (nt)  1233   Chromosome Location  V: 13557104-13559922
Chromosome . Primary Identifier  V Chromosome Location . Start  13557104
Chromosome Location . End  13559922 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C56A3.7a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000302 cav-2 C56A3.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C56A3.7a C56A3.7a 1056   V: 13557160-13557231

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C56A3.7a.1 13557104 13559922 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon204772   128   V: 13557104-13557231 Caenorhabditis elegans
Exon204774   111   V: 13557279-13557389 Caenorhabditis elegans
Exon204776   99   V: 13557429-13557527 Caenorhabditis elegans
Exon204778   93   V: 13557575-13557667 Caenorhabditis elegans
Exon204781   90   V: 13557717-13557806 Caenorhabditis elegans
Exon204784   71   V: 13558471-13558541 Caenorhabditis elegans
Exon204787   136   V: 13558737-13558872 Caenorhabditis elegans
Exon204791   78   V: 13559324-13559401 Caenorhabditis elegans
Exon204795   123   V: 13559444-13559566 Caenorhabditis elegans
Exon204802   304   V: 13559619-13559922 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C56A3.7a.1 13557104 13559922 1

1 Sequence

Length
1233

1 Sequence Ontology Term

Identifier Name Description
transcript