WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:C56A3.7a Sequence Name  C56A3.7a
Length (nt)  1056   Chromosome Location  V: 13557160-13557231
Chromosome . Primary Identifier  V Chromosome Location . Start  13557160
Chromosome Location . End  13557231
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C56A3.7a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE15738 CAV-2, isoform a 40.8 351 Caenorhabditis elegans
 

Other

8 RNAi

WormBase ID
WBRNAi00043257
WBRNAi00012452
WBRNAi00102909
WBRNAi00102915
WBRNAi00102917
WBRNAi00102916
WBRNAi00027704
WBRNAi00102910

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:C56A3.7a 13557160 13557231 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000302 cav-2 C56A3.7 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:C56A3.7a 13557160 13557231 1
CDS:C56A3.7a 13557279 13557389 1
CDS:C56A3.7a 13557429 13557527 1
CDS:C56A3.7a 13557575 13557667 1
CDS:C56A3.7a 13557717 13557806 1
CDS:C56A3.7a 13558471 13558541 1
CDS:C56A3.7a 13558737 13558872 1
CDS:C56A3.7a 13559324 13559401 1
CDS:C56A3.7a 13559444 13559566 1
CDS:C56A3.7a 13559619 13559801 1

1 Sequence

Length
1056

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:C56A3.7a.1 C56A3.7a.1 1233   V: 13557104-13559922