WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53F4.4a.1 Sequence Name  F53F4.4a.1
Length (nt)  2189   Chromosome Location  V: 13593383-13598347
Chromosome . Primary Identifier  V Chromosome Location . Start  13593383
Chromosome Location . End  13598347 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53F4.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009988 F53F4.4 F53F4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53F4.4a F53F4.4a 2067   V: 13593427-13593475

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53F4.4a.1 13593383 13598347 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon204884   93   V: 13593383-13593475 Caenorhabditis elegans
Exon204887   116   V: 13594048-13594163 Caenorhabditis elegans
Exon204891   250   V: 13594589-13594838 Caenorhabditis elegans
Exon204894   126   V: 13595597-13595722 Caenorhabditis elegans
Exon204897   451   V: 13595784-13596234 Caenorhabditis elegans
Exon204900   268   V: 13596660-13596927 Caenorhabditis elegans
Exon204903   291   V: 13596976-13597266 Caenorhabditis elegans
Exon204906   129   V: 13597470-13597598 Caenorhabditis elegans
Exon204909   120   V: 13597645-13597764 Caenorhabditis elegans
Exon204912   150   V: 13597814-13597963 Caenorhabditis elegans
Exon204917   195   V: 13598153-13598347 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53F4.4a.1 13593383 13598347 1

1 Sequence

Length
2189

1 Sequence Ontology Term

Identifier Name Description
transcript