WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53F4.4c.1 Sequence Name  F53F4.4c.1
Length (nt)  2070   Chromosome Location  V: 13593427-13598269
Chromosome . Primary Identifier  V Chromosome Location . Start  13593427
Chromosome Location . End  13598269 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53F4.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009988 F53F4.4 F53F4.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53F4.4c F53F4.4c 2070   V: 13593427-13593475

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53F4.4c.1 13593427 13598269 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon204886   49   V: 13593427-13593475 Caenorhabditis elegans
Exon204888   116   V: 13594048-13594163 Caenorhabditis elegans
Exon204892   250   V: 13594589-13594838 Caenorhabditis elegans
Exon204895   126   V: 13595597-13595722 Caenorhabditis elegans
Exon204898   451   V: 13595784-13596234 Caenorhabditis elegans
Exon204901   268   V: 13596660-13596927 Caenorhabditis elegans
Exon204904   291   V: 13596976-13597266 Caenorhabditis elegans
Exon204908   132   V: 13597470-13597601 Caenorhabditis elegans
Exon204910   120   V: 13597645-13597764 Caenorhabditis elegans
Exon204913   150   V: 13597814-13597963 Caenorhabditis elegans
Exon204915   117   V: 13598153-13598269 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53F4.4c.1 13593427 13598269 1

1 Sequence

Length
2070

1 Sequence Ontology Term

Identifier Name Description
transcript