WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53C11.5a.1 Sequence Name  F53C11.5a.1
Length (nt)  2903   Chromosome Location  V: 13787549-13796254
Chromosome . Primary Identifier  V Chromosome Location . Start  13787549
Chromosome Location . End  13796254 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53C11.5a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009975 F53C11.5 F53C11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53C11.5a F53C11.5a 2568   V: 13787549-13787615

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53C11.5a.1 13787549 13796254 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon205510   67   V: 13787549-13787615 Caenorhabditis elegans
Exon205513   234   V: 13791017-13791250 Caenorhabditis elegans
Exon205516   450   V: 13791833-13792282 Caenorhabditis elegans
Exon205519   78   V: 13792735-13792812 Caenorhabditis elegans
Exon205522   92   V: 13792859-13792950 Caenorhabditis elegans
Exon205525   229   V: 13792995-13793223 Caenorhabditis elegans
Exon205528   106   V: 13793447-13793552 Caenorhabditis elegans
Exon205531   546   V: 13793997-13794542 Caenorhabditis elegans
Exon205534   213   V: 13794974-13795186 Caenorhabditis elegans
Exon205537   369   V: 13795235-13795603 Caenorhabditis elegans
Exon205540   105   V: 13795652-13795756 Caenorhabditis elegans
Exon205545   414   V: 13795841-13796254 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53C11.5a.1 13787549 13796254 1

1 Sequence

Length
2903

1 Sequence Ontology Term

Identifier Name Description
transcript