WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F09F3.5.1 Sequence Name  F09F3.5.1
Length (nt)  2202   Chromosome Location  V: 13850470-13853199
Chromosome . Primary Identifier  V Chromosome Location . Start  13850470
Chromosome Location . End  13853199 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F09F3.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008627 hpx-2 F09F3.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F09F3.5 F09F3.5 2157   V: 13850499-13850548

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F09F3.5.1 13850470 13853199 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon205702   79   V: 13850470-13850548 Caenorhabditis elegans
Exon205703   214   V: 13850596-13850809 Caenorhabditis elegans
Exon205704   197   V: 13850907-13851103 Caenorhabditis elegans
Exon205705   290   V: 13851168-13851457 Caenorhabditis elegans
Exon205706   396   V: 13851545-13851940 Caenorhabditis elegans
Exon205707   420   V: 13851985-13852404 Caenorhabditis elegans
Exon205708   163   V: 13852457-13852619 Caenorhabditis elegans
Exon205710   266   V: 13852665-13852930 Caenorhabditis elegans
Exon205711   97   V: 13852980-13853076 Caenorhabditis elegans
Exon205712   80   V: 13853120-13853199 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F09F3.5.1 13850470 13853199 1

1 Sequence

Length
2202

1 Sequence Ontology Term

Identifier Name Description
transcript