WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08G5.5b.1 Sequence Name  T08G5.5b.1
Length (nt)  3074   Chromosome Location  V: 14034323-14038372
Chromosome . Primary Identifier  V Chromosome Location . Start  14034323
Chromosome Location . End  14038372 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08G5.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011625 vps-39 T08G5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08G5.5b T08G5.5b 2781   V: 14034593-14034805

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08G5.5b.1 14034323 14038372 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon206199   483   V: 14034323-14034805 Caenorhabditis elegans
Exon206205   593   V: 14035405-14035997 Caenorhabditis elegans
Exon206208   532   V: 14036045-14036576 Caenorhabditis elegans
Exon206214   290   V: 14036622-14036911 Caenorhabditis elegans
Exon206216   369   V: 14036956-14037324 Caenorhabditis elegans
Exon206220   293   V: 14037377-14037669 Caenorhabditis elegans
Exon206224   143   V: 14037714-14037856 Caenorhabditis elegans
Exon206228   209   V: 14037905-14038113 Caenorhabditis elegans
Exon206232   66   V: 14038164-14038229 Caenorhabditis elegans
Exon206236   96   V: 14038277-14038372 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08G5.5b.1 14034323 14038372 -1

1 Sequence

Length
3074

1 Sequence Ontology Term

Identifier Name Description
transcript