WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T08G5.5d.1 Sequence Name  T08G5.5d.1
Length (nt)  3065   Chromosome Location  V: 14034329-14038378
Chromosome . Primary Identifier  V Chromosome Location . Start  14034329
Chromosome Location . End  14038378 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T08G5.5d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011625 vps-39 T08G5.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T08G5.5d T08G5.5d 2772   V: 14034593-14034805

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T08G5.5d.1 14034329 14038378 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon206202   477   V: 14034329-14034805 Caenorhabditis elegans
Exon206206   593   V: 14035405-14035997 Caenorhabditis elegans
Exon206210   532   V: 14036045-14036576 Caenorhabditis elegans
Exon206212   281   V: 14036622-14036902 Caenorhabditis elegans
Exon206218   369   V: 14036956-14037324 Caenorhabditis elegans
Exon206222   293   V: 14037377-14037669 Caenorhabditis elegans
Exon206226   143   V: 14037714-14037856 Caenorhabditis elegans
Exon206230   209   V: 14037905-14038113 Caenorhabditis elegans
Exon206234   66   V: 14038164-14038229 Caenorhabditis elegans
Exon206238   102   V: 14038277-14038378 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T08G5.5d.1 14034329 14038378 -1

1 Sequence

Length
3065

1 Sequence Ontology Term

Identifier Name Description
transcript