WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00050930 Gene Name  T08G5.13
Sequence Name  ? T08G5.13 Organism  Caenorhabditis elegans
Automated Description  Enriched in PDA and cholinergic neurons based on single-cell RNA-seq studies. Is affected by mut-16 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 1339
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00050930

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

8 Allele

Public Name
gk963271
gk963706
gk963301
gk964458
gk964459
WBVar02124255
WBVar01744310
WBVar02124256

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00050930 14038896 14040234 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_14038379..14038895   517 V: 14038379-14038895 Caenorhabditis elegans

6 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in mut-16(pk710), comparing to in N2 animals. DESeq2 v. 1.22.2, adjusted p-value <= 0.05. WBPaper00059605:mut-16(pk710)_upregulated
heat-shock hlh-1 Genes enriched in HLH-1 heat shock dataset. A two-class unpaired analysis was performed to identify genes that are elevated 1.7-fold or greater when compared with the reference for each dataset, at a false discovery rate of 1.8% or less for M0 and 1.2% or less for the M24 datasets. WBPaper00031003:hlh_1_enriched
UVC-EtBr-exposed(exposed to 7.5 J/m2 UVC radiation 3 times, 24 h apart (48 h total) and exposed to EtBr (5ug/mL in agar).) vs EtBr-exposed(maintained under normal lab light (mostly dark, in incubators) and exposed to EtBr (5ug/mL in agar).) at 3 h after the first UVC dose (3h). Genes differentially expressed under UVC exposure and EtBr treatment vs under EtBr treatment but without UVC exposure at the -45h timepoint (3 hours after the first UVC dose). Transcripts were defined as fold-change >1.2, p < 0.05 based on Rosetta Resolver analysis for all pairwise treatment comparisons. The fold-change refers to the second intensity over the first. WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
  Single-cell RNA-Seq cell group 6_1 expressed in neuron. scVI 0.6.0 WBPaper00065841:6_1
  Single-cell RNA-Seq cell group 136_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:136_0
  Single-cell RNA-Seq cell group 6_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:6_0

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00050930 14038896 14040234 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1339

1 Sequence Ontology Term