WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219553 Gene Name  T08G5.19
Sequence Name  ? T08G5.19 Organism  Caenorhabditis elegans
Automated Description  Is affected by sams-3 and sams-4 based on RNA-seq studies. Biotype  SO:0002182
Genetic Position  Length (nt)  ? 1605
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219553

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:T08G5.19 T08G5.19 952   V: 14043544-14045148
 

Other

0 CDSs

7 RNAi Result

WormBase ID
WBRNAi00042984
WBRNAi00013790
WBRNAi00015780
WBRNAi00015783
WBRNAi00015951
WBRNAi00018470
WBRNAi00112642

8 Allele

Public Name
gk963271
gk963706
gk963301
gk964458
gk964459
tm3689
gk986
gk956

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219553 14043544 14045148 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_14040235..14043543   3309 V: 14040235-14043543 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in sams-3(RNAi) comparing to N2 animals injected with empty vector. Deseq FDR < 0.01, fold change > 2. WBPaper00065005:sams-3(RNAi)_upregulated
  Transcripts that showed significantly increased expression in sams-4(RNAi) comparing to N2 animals injected with empty vector. Deseq FDR < 0.01, fold change > 2. WBPaper00065005:sams-4(RNAi)_upregulated
Mating for 24 hours with oleic acid supplement. Transcripts that showed significantly increased expression after glp-1(e2141) hermaphrodites mated for 24 hours with oleic acid supplement. Two-class SAM analysis WBPaper00061572:oleic-acid-specific_mating_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219553 14043544 14045148 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1605

1 Sequence Ontology Term