WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y40H4A.1b.1 Sequence Name  Y40H4A.1b.1
Length (nt)  2084   Chromosome Location  V: 14564820-14569975
Chromosome . Primary Identifier  V Chromosome Location . Start  14564820
Chromosome Location . End  14569975 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y40H4A.1b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001519 gar-3 Y40H4A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y40H4A.1b Y40H4A.1b 1836   V: 14565068-14565155

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y40H4A.1b.1 14564820 14569975 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon207629   336   V: 14564820-14565155 Caenorhabditis elegans
Exon207634   124   V: 14565506-14565629 Caenorhabditis elegans
Exon207638   245   V: 14565678-14565922 Caenorhabditis elegans
Exon207642   179   V: 14566638-14566816 Caenorhabditis elegans
Exon207646   312   V: 14566903-14567214 Caenorhabditis elegans
Exon207647   78   V: 14567858-14567935 Caenorhabditis elegans
Exon207651   467   V: 14567984-14568450 Caenorhabditis elegans
Exon207655   88   V: 14568778-14568865 Caenorhabditis elegans
Exon207659   180   V: 14568924-14569103 Caenorhabditis elegans
Exon207660   75   V: 14569901-14569975 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y40H4A.1b.1 14564820 14569975 -1

1 Sequence

Length
2084

1 Sequence Ontology Term

Identifier Name Description
transcript