WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47E8.8d.1 Sequence Name  C47E8.8d.1
Length (nt)  4690   Chromosome Location  V: 14698970-14707592
Chromosome . Primary Identifier  V Chromosome Location . Start  14698970
Chromosome Location . End  14707592 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47E8.8d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008145 set-5 C47E8.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47E8.8d C47E8.8d 4563   V: 14698970-14699536

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C47E8.8d.1 14698970 14707592 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon207930   567   V: 14698970-14699536 Caenorhabditis elegans
Exon207932   347   V: 14700109-14700455 Caenorhabditis elegans
Exon207938   165   V: 14700696-14700860 Caenorhabditis elegans
Exon207942   105   V: 14700906-14701010 Caenorhabditis elegans
Exon207946   327   V: 14701315-14701641 Caenorhabditis elegans
Exon207950   105   V: 14701836-14701940 Caenorhabditis elegans
Exon207954   1533   V: 14702148-14703680 Caenorhabditis elegans
Exon207958   114   V: 14703730-14703843 Caenorhabditis elegans
Exon207962   204   V: 14703981-14704184 Caenorhabditis elegans
Exon207966   102   V: 14704580-14704681 Caenorhabditis elegans
Exon207969   117   V: 14704796-14704912 Caenorhabditis elegans
Exon207974   120   V: 14704993-14705112 Caenorhabditis elegans
Exon207978   117   V: 14705376-14705492 Caenorhabditis elegans
Exon207985   207   V: 14706114-14706320 Caenorhabditis elegans
Exon207989   160   V: 14706605-14706764 Caenorhabditis elegans
Exon207993   213   V: 14706995-14707207 Caenorhabditis elegans
Exon207996   187   V: 14707406-14707592 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C47E8.8d.1 14698970 14707592 1

1 Sequence

Length
4690

1 Sequence Ontology Term

Identifier Name Description
transcript