WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47E8.8b.1 Sequence Name  C47E8.8b.1
Length (nt)  3993   Chromosome Location  V: 14700226-14707465
Chromosome . Primary Identifier  V Chromosome Location . Start  14700226
Chromosome Location . End  14707465 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47E8.8b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008145 set-5 C47E8.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47E8.8b C47E8.8b 3993   V: 14700226-14700455

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C47E8.8b.1 14700226 14707465 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon207933   230   V: 14700226-14700455 Caenorhabditis elegans
Exon207936   165   V: 14700696-14700860 Caenorhabditis elegans
Exon207940   105   V: 14700906-14701010 Caenorhabditis elegans
Exon207944   327   V: 14701315-14701641 Caenorhabditis elegans
Exon207948   105   V: 14701836-14701940 Caenorhabditis elegans
Exon207952   1533   V: 14702148-14703680 Caenorhabditis elegans
Exon207956   114   V: 14703730-14703843 Caenorhabditis elegans
Exon207960   204   V: 14703981-14704184 Caenorhabditis elegans
Exon207964   102   V: 14704580-14704681 Caenorhabditis elegans
Exon207968   117   V: 14704796-14704912 Caenorhabditis elegans
Exon207972   120   V: 14704993-14705112 Caenorhabditis elegans
Exon207976   117   V: 14705376-14705492 Caenorhabditis elegans
Exon207980   114   V: 14705818-14705931 Caenorhabditis elegans
Exon207983   207   V: 14706114-14706320 Caenorhabditis elegans
Exon207987   160   V: 14706605-14706764 Caenorhabditis elegans
Exon207991   213   V: 14706995-14707207 Caenorhabditis elegans
Exon207994   60   V: 14707406-14707465 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C47E8.8b.1 14700226 14707465 1

1 Sequence

Length
3993

1 Sequence Ontology Term

Identifier Name Description
transcript