WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C47E8.8c.1 Sequence Name  C47E8.8c.1
Length (nt)  4002   Chromosome Location  V: 14700226-14707465
Chromosome . Primary Identifier  V Chromosome Location . Start  14700226
Chromosome Location . End  14707465 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C47E8.8c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008145 set-5 C47E8.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C47E8.8c C47E8.8c 4002   V: 14700226-14700455

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C47E8.8c.1 14700226 14707465 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon207934   230   V: 14700226-14700455 Caenorhabditis elegans
Exon207937   165   V: 14700696-14700860 Caenorhabditis elegans
Exon207941   105   V: 14700906-14701010 Caenorhabditis elegans
Exon207945   327   V: 14701315-14701641 Caenorhabditis elegans
Exon207949   105   V: 14701836-14701940 Caenorhabditis elegans
Exon207953   1533   V: 14702148-14703680 Caenorhabditis elegans
Exon207957   114   V: 14703730-14703843 Caenorhabditis elegans
Exon207961   204   V: 14703981-14704184 Caenorhabditis elegans
Exon207965   102   V: 14704580-14704681 Caenorhabditis elegans
Exon207970   126   V: 14704796-14704921 Caenorhabditis elegans
Exon207973   120   V: 14704993-14705112 Caenorhabditis elegans
Exon207977   117   V: 14705376-14705492 Caenorhabditis elegans
Exon207981   114   V: 14705818-14705931 Caenorhabditis elegans
Exon207984   207   V: 14706114-14706320 Caenorhabditis elegans
Exon207988   160   V: 14706605-14706764 Caenorhabditis elegans
Exon207992   213   V: 14706995-14707207 Caenorhabditis elegans
Exon207995   60   V: 14707406-14707465 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C47E8.8c.1 14700226 14707465 1

1 Sequence

Length
4002

1 Sequence Ontology Term

Identifier Name Description
transcript