WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C48G7.3i.1 Sequence Name  C48G7.3i.1
Length (nt)  4107   Chromosome Location  V: 14784641-14804809
Chromosome . Primary Identifier  V Chromosome Location . Start  14784641
Chromosome Location . End  14804809 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C48G7.3i.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00008183 rin-1 C48G7.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C48G7.3i C48G7.3i 4107   V: 14784641-14784794

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:C48G7.3i.1 14784641 14804809 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

17 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon208122   154   V: 14784641-14784794 Caenorhabditis elegans
Exon208130   469   V: 14785180-14785648 Caenorhabditis elegans
Exon208139   1122   V: 14786002-14787123 Caenorhabditis elegans
Exon208148   120   V: 14787178-14787297 Caenorhabditis elegans
Exon208157   169   V: 14787600-14787768 Caenorhabditis elegans
Exon208165   190   V: 14789510-14789699 Caenorhabditis elegans
Exon208173   549   V: 14795926-14796474 Caenorhabditis elegans
Exon208182   82   V: 14797522-14797603 Caenorhabditis elegans
Exon208187   174   V: 14798223-14798396 Caenorhabditis elegans
Exon208193   97   V: 14798971-14799067 Caenorhabditis elegans
Exon208197   172   V: 14799235-14799406 Caenorhabditis elegans
Exon208201   85   V: 14800805-14800889 Caenorhabditis elegans
Exon208205   120   V: 14801778-14801897 Caenorhabditis elegans
Exon208209   54   V: 14802124-14802177 Caenorhabditis elegans
Exon208213   181   V: 14803301-14803481 Caenorhabditis elegans
Exon208217   239   V: 14803754-14803992 Caenorhabditis elegans
Exon208218   130   V: 14804680-14804809 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:C48G7.3i.1 14784641 14804809 -1

1 Sequence

Length
4107

1 Sequence Ontology Term

Identifier Name Description
transcript