WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005797 Gene Name  srw-50
Sequence Name  ? M01B2.5 Organism  Caenorhabditis elegans
Automated Description  Is affected by resveratrol based on microarray studies. Biotype  SO:0000336
Genetic Position  V :7.62731 ±0.00223 Length (nt)  ? 1283
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005797

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

15 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
gk964036
h4533
gk255402
gk844376
gk255401
gk931767
gk255400
WBVar00019300
WBVar01809147
gk628427
gk829742

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00005797 15248175 15249457 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15249458..15250603   1146 V: 15249458-15250603 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Genes found to be regulated in daf-16(mgDf50) by resveratrol treatment with p < 0.01. N.A. WBPaper00026929:Resveratrol_regulated_daf-16
control(maintained under normal lab light (mostly dark, in incubators).) vs UVC-exposed(exposed to 7.5 J/m2 UVC radiation 3 times, 24 h apart (48 h total).) at just prior to the third UVC dose (48h). Genes differentially expressed in control vsafter UVC exposure without EtBr treatment, at the -1h timepoint (just prior to the third UVC dose (48h)). Transcripts were defined as fold-change >1.2, p < 0.05 based on Rosetta Resolver analysis for all pairwise treatment comparisons. The fold-change refers to the second intensity over the first. WBPaper00041939:control_vs_UVC-exposed_48h

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00005797 15248175 15249457 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1283

1 Sequence Ontology Term