WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014839 Gene Name  T10H4.1
Sequence Name  ? T10H4.1 Organism  Caenorhabditis elegans
Automated Description  Is affected by rifampin and allantoin based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 1310
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014839

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

100 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
gk964389
WBVar02123699
WBVar02123127
WBVar02124055
WBVar00019470
gk964036
tm10831
WBVar02122850
WBVar02124258
WBVar01975678
WBVar01828442
gk255472
gk255473
gk960218
WBVar02107414
WBVar02107413
WBVar00019465
WBVar02107412
WBVar02107411
WBVar01744916
WBVar01776075
WBVar00019475
WBVar01776076
WBVar01776073
WBVar01776074
WBVar01744914

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014839 15284242 15285551 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15285552..15285555   4 V: 15285552-15285555 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression after animals were treated with 50uM Rifampicin and 250uM Allantoin from day 1 to day 3 adult hermaphradite. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:Rifampicin-Allantoin_upregulated
  Germline-enriched and sex-biased expression profile cluster C. hierarchical clustering [cgc6390]:Cluster_C

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014839 15284242 15285551 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1310

1 Sequence Ontology Term