WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219323 Gene Name  nspd-12
Sequence Name  ? T26H5.12 Organism  Caenorhabditis elegans
Automated Description  Is affected by flr-4; daf-2; and eat-2 based on RNA-seq and microarray studies. Biotype  SO:0000336
Genetic Position  V :8.09542± Length (nt)  ? 276
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219323

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

30 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
WBVar02122853
WBVar02124135
WBVar02123700
WBVar02124726
WBVar02122679
WBVar02123128
gk963607
WBVar02123773
WBVar02121279
WBVar02121481
WBVar02123532
gk962910
WBVar02123601
gk964292
WBVar02124374
gk964181
gk964389
WBVar02120863
h14256
gk255768
gk255767
WBVar01745350
WBVar01745349
gk433354
gk662339
WBVar02076148

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219323 15436573 15436848 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15432727..15436572   3846 V: 15432727-15436572 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in daf-2(e1370) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:daf-2(e1370)_upregulated
  Transcripts that showed significantly increased expression in eat-2(ad465) comparing to in N2. Student's t-test, fold change > 2, p-value < 0.05. WBPaper00055386:eat-2(ad465)_upregulated
  Transcripts that showed significantly increased expression in flr-1(RNAi) comparing to in control RNAi animals. This is an incomplete list. N.A. WBPaper00055060:flr-1(RNAi)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219323 15436573 15436848 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
276

1 Sequence Ontology Term