WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F28F8.1.1 Sequence Name  F28F8.1.1
Length (nt)  1615   Chromosome Location  V: 15551157-15559147
Chromosome . Primary Identifier  V Chromosome Location . Start  15551157
Chromosome Location . End  15559147 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F28F8.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000057 acr-18 F28F8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F28F8.1 F28F8.1 1533   V: 15551239-15551414

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F28F8.1.1 15551157 15559147 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon210062   258   V: 15551157-15551414 Caenorhabditis elegans
Exon210063   229   V: 15551538-15551766 Caenorhabditis elegans
Exon210066   117   V: 15552449-15552565 Caenorhabditis elegans
Exon210067   152   V: 15552853-15553004 Caenorhabditis elegans
Exon210068   131   V: 15553162-15553292 Caenorhabditis elegans
Exon210069   102   V: 15553341-15553442 Caenorhabditis elegans
Exon210070   125   V: 15553492-15553616 Caenorhabditis elegans
Exon210071   139   V: 15553709-15553847 Caenorhabditis elegans
Exon210073   287   V: 15554127-15554413 Caenorhabditis elegans
Exon210074   75   V: 15559073-15559147 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F28F8.1.1 15551157 15559147 -1

1 Sequence

Length
1615

1 Sequence Ontology Term

Identifier Name Description
transcript