WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014800 Gene Name  nhr-200
Sequence Name  ? K06B4.13 Organism  Caenorhabditis elegans
Automated Description  Is affected by etr-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :8.64637± Length (nt)  ? 1163
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014800

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

53 Allele

Public Name
gk963271
gk963301
gk964458
gk964459
gk964389
gk963695
WBVar01975902
WBVar01975903
WBVar01590829
WBVar01590833
WBVar01590834
WBVar01590830
WBVar01590831
WBVar01590832
WBVar01828792
WBVar00023165
gk720886
gk882717
gk575312
gk494873
WBVar01800513
gk423306
WBVar00023170
gk489368
WBVar01777244
gk652085
gk905712
gk322427
WBVar01908976
gk638372

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014800 15691999 15693161 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15693162..15693993   832 V: 15693162-15693993 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts of noncoding genes that showed significantly decreased expression in muscle. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:muscle_depleted_noncoding-RNA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014800 15691999 15693161 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1163

1 Sequence Ontology Term