WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00044103 Gene Name  srbc-47
Sequence Name  ? F54B8.14 Organism  Caenorhabditis elegans
Biotype  SO:0000336 Genetic Position  V :8.96349 ±0.000633
Length (nt)  ? 1401
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00044103

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

32 Allele

Public Name
gk963271
gk964458
gk964459
WBVar02124261
gk963695
WBVar01463616
gk256601
gk256600
tm11197
gk310656
WBVar01591340
WBVar02038915
WBVar00025245
WBVar00025250
WBVar01873842
WBVar01873843
WBVar00025255
WBVar01975992
WBVar01975991
WBVar01800589
WBVar00025260
gk550643
WBVar01800588
gk764181
gk914815
gk685821
gk937585
WBVar00025265
WBVar01777386
WBVar01800587

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00044103 15818427 15819827 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15819828..15820282   455 V: 15819828-15820282 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Bacteria infection: P. aerugi-nosa PA14 Transcripts differentially expressed between AWA neurons of adult hermaphrodite worms exposed to PA14 and AWA neurons of adult hermaphrodite worms exposed to OP50 for 4-6 hours. P values are derived from two-sided exact test used in the R package edgeR and the FDR values are BenjaminiHochberg adjusted P values. FDR < 0.05 (set by WormBase Curator). WBPaper00064871:PA14_downregulated_AWA

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00044103 15818427 15819827 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1401

1 Sequence Ontology Term