WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077603 Gene Name  T05G11.9
Sequence Name  ? T05G11.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by swsn-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 400
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077603

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

22 Allele

Public Name
gk963271
gk964458
gk964459
WBVar02124626
WBVar02124261
WBVar02122682
WBVar02124830
WBVar02121287
WBVar02124905
WBVar02123702
WBVar02121632
WBVar02122857
WBVar01873902
WBVar01777490
WBVar00592501
gk927177
gk320918
gk781035
gk519106
gk511338
gk511337
WBVar01899524

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00077603 15929399 15929798 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_15929799..15930181   383 V: 15929799-15930181 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly decreased expression in whole animal day 1 N2 adults comparing to in whole animal day 8 N2 adults. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:Day1Adult_vs_Day8Adult_downregulated_neuron
  Transcripts that showed significantly increased expression in swsn-1(os22ts) comparing to in N2 animals at young adult worms. DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.) WBPaper00060764:swsn-1(os22ts)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00077603 15929399 15929798 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
400

1 Sequence Ontology Term