WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077609 Gene Name  F44G3.15
Sequence Name  ? F44G3.15 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1 based on microarray studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 224
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077609

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

16 Allele

Public Name
gk963271
gk964458
gk964459
WBVar02124626
WBVar02124261
WBVar02122470
WBVar02120521
gk963302
WBVar02122682
WBVar02124830
WBVar00030515
WBVar00030520
h10678
gk404877
gk793866
gk857653

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00077609 16118937 16119160 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_16118702..16118936   235 V: 16118702-16118936 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in daf-2(e1370) neurons comparing to in N2 neurons at day 8adult stage. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:daf-2(e1370)_upregulated_neuron
  Transcripts that showed significantly increased expression in daf-16(mu86);daf-2(e1370) neurons comparing to in daf-2(e1370) neurons at day 8adult stage. DESeq2, FDR < 0.05, fold change > 2. WBPaper00066978:daf-16(mu86)_upregulated_neuron
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00077609 16118937 16119160 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
224

1 Sequence Ontology Term