WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014733 Gene Name  F10A3.10
Sequence Name  ? F10A3.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1 and ogt-1 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 1289
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014733

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

61 Allele

Public Name
gk963271
gk964458
gk964459
WBVar02124626
WBVar02124261
gk963302
WBVar02122682
WBVar02124830
gk963225
WBVar02124056
WBVar00031410
WBVar01828945
gk953440
cxTi10456
WBVar02124262
WBVar02124906
WBVar02123704
WBVar02123138
WBVar02123300
WBVar02121288
WBVar01874717
WBVar01874718
gk533722
WBVar01633052
WBVar01633053
WBVar01633054
WBVar01633055
WBVar01633056
gk731088
WBVar01633057

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014733 16147039 16148327 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_16145870..16147038   1169 V: 16145870-16147038 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated
  Transcripts that showed significantly decreased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_downregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014733 16147039 16148327 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1289

1 Sequence Ontology Term