WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014740 Gene Name  F21H7.6
Sequence Name  ? F21H7.6 Organism  Caenorhabditis elegans
Automated Description  Is affected by qui-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 1115
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014740

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

77 Allele

Public Name
gk963271
WBVar02124497
WBVar02124626
WBVar02124261
gk963302
WBVar02122682
WBVar02124830
WBVar02123301
WBVar02121289
WBVar02124057
tm10593
WBVar01976235
WBVar00033980
WBVar00033985
WBVar00033990
WBVar00033995
WBVar00033970
WBVar00033975
WBVar00034000
WBVar00034005
WBVar00034010
WBVar00034015
WBVar00034020
WBVar00034025
WBVar00034030
WBVar01593004
WBVar01593003
WBVar01593000
WBVar01593002
WBVar01593001

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014740 16239333 16240447 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_16240448..16240815   368 V: 16240448-16240815 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed lower expression in neurons isolated from male day 2 vs day 8. DESeq2 analysis was then employed for read normalization and differential expression analysis of the counted reads. PCA analysiswas performed along with the DESeq2 package. Genes with a log2(fold-change) > 1 and p-adjusted < 0.05 were considered differentially expressed in subsequent analysis. WBPaper00066831:male-neuron_aging_upregulated
  Transcripts that showed significantly increased expression in ADL neurons of qui-1(db104) comparing to in N2 at day 1 adult stage. tximport 1.14.2 and DEseq2 1.26.0. Fold change > 2, FDR < 0.05. WBPaper00062520:qui-1(db104)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014740 16239333 16240447 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1115

1 Sequence Ontology Term