WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F57G8.5.1 Sequence Name  F57G8.5.1
Length (nt)  1583   Chromosome Location  V: 16339042-16341536
Chromosome . Primary Identifier  V Chromosome Location . Start  16339042
Chromosome Location . End  16341536 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F57G8.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010214 slc-9B.2 F57G8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F57G8.5 F57G8.5 1497   V: 16339065-16339100

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F57G8.5.1 16339042 16341536 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon211925   59   V: 16339042-16339100 Caenorhabditis elegans
Exon211926   79   V: 16339149-16339227 Caenorhabditis elegans
Exon211927   141   V: 16339326-16339466 Caenorhabditis elegans
Exon211928   161   V: 16339511-16339671 Caenorhabditis elegans
Exon211929   110   V: 16339755-16339864 Caenorhabditis elegans
Exon211930   176   V: 16340108-16340283 Caenorhabditis elegans
Exon211931   362   V: 16340542-16340903 Caenorhabditis elegans
Exon211932   156   V: 16340948-16341103 Caenorhabditis elegans
Exon211933   171   V: 16341155-16341325 Caenorhabditis elegans
Exon211934   168   V: 16341369-16341536 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F57G8.5.1 16339042 16341536 1

1 Sequence

Length
1583

1 Sequence Ontology Term

Identifier Name Description
transcript