WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077615 Gene Name  T08G3.14
Sequence Name  ? T08G3.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by nhr-49 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 675
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077615

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

38 Allele

Public Name
gk963271
WBVar02123303
WBVar02124908
WBVar02123708
WBVar02124497
WBVar02124626
WBVar02124059
WBVar02121634
gk963302
WBVar02124428
WBVar02122859
WBVar02124265
WBVar02121290
WBVar01976411
WBVar00037710
WBVar02124727
WBVar02122683
WBVar02124628
WBVar01593349
h17010
h7660
WBVar01874854
WBVar01874855
WBVar01874856
WBVar02104998
gk258166
gk258165
gk258164
gk258163
WBVar00593798

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00077615 16477134 16477808 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_16476826..16477133   308 V: 16476826-16477133 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in AGP22 [nhr-49(nr2041)I;glp-1(e2141)III] comparing to in CF1903 [glp-1(e2144)III] at Day 2 adults. Fold change > 2, p Value of < 0.05 and a false discovery rate (FDR) of < 0.05. WBPaper00061530:nhr-49(e2144)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00077615 16477134 16477808 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
675

1 Sequence Ontology Term