WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077619 Gene Name  F36D3.15
Sequence Name  ? F36D3.15 Organism  Caenorhabditis elegans
Automated Description  Is affected by hrpr-1; hpl-2; and swsn-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 553
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077619

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

28 Allele

Public Name
gk963271
WBVar02123303
WBVar02124908
gk964050
WBVar02123708
WBVar02124497
WBVar02124626
WBVar02124059
WBVar02121634
gk963302
WBVar02124428
WBVar02122859
WBVar01976448
WBVar01976449
WBVar02121635
WBVar00038950
gk258283
gk258282
gk258285
gk258284
WBVar01907319
WBVar01907320
gk313097
gk931769
otn5459
gk617974
gk322429
gk900722

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00077619 16523006 16523558 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_16522343..16523005   663 V: 16522343-16523005 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in swsn-1(os22ts) comparing to in N2 animals at young adult worms. DESeq2, FDR<0.05 and fold-change 2. (Threshold set by WormBase curator.) WBPaper00060764:swsn-1(os22ts)_upregulated
  Transcripts that showed significantly increased expression in hpl-2(tm1489) comparing to in N2 animals. DESeq2, adjusted p-value < 0.05, log2 fold change > 2 or < -2. WBPaper00054493:hpl-2(tm1489)_upregulated
  Genes that showed significantly decreased expression in hrp-2(RNAi) animals comparing to in control animals. DESeq2, adjusted p-value < 0.1, log2 Fold change >= 2 or <= -2. WBPaper00050504:hrp-2(RNAi)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00077619 16523006 16523558 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
553

1 Sequence Ontology Term