WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00235339 Gene Name  F14F8.15
Sequence Name  ? F14F8.15 Organism  Caenorhabditis elegans
Automated Description  Enriched in somatic gonad precursor based on RNA-seq studies. Is affected by pqn-59 based on proteomic studies. Is affected by rifampin based on RNA-seq studies. Biotype  SO:0001217
Genetic Position  :± Length (nt)  ? 270
Paste the following link
Quick Links:
SummaryGenomicsOther
 
Quick Links:
SummaryGenomicsOther
 
Lists
This Gene isn't in any lists. Upload a list.

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00235339

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:F14F8.15.1 F14F8.15.1 270   V: 16663347-16663616
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F14F8.15 F14F8.15 270   V: 16663347-16663616

2 RNAi Result

WormBase ID
WBRNAi00054904
WBRNAi00019670

23 Allele

Public Name
gk963271
gk963489
WBVar02123303
WBVar02124908
gk964050
WBVar02123708
WBVar02124497
WBVar02124626
WBVar02124059
WBVar02121634
WBVar02124972
WBVar02122684
WBVar02123774
WBVar02121793
WBVar02123140
WBVar02120522
WBVar02120714
WBVar02124428
WBVar02121293
WBVar02122254
WBVar02122399
WBVar02120864
gk963303

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00235339 16663347 16663616 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_16662961..16663346   386 V: 16662961-16663346 Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression after animals were treated with 50uM Rifampicin from day 1 to day 3 adult hermaphradite. DESeq2(v1.14.1), fold change > 2, p-value < 0.05 WBPaper00055354:Rifampicin_upregulated
  Transcripts that showed significantly higher expression in somatic gonad precursor cells (SGP) vs. head mesodermal cells (hmc). DESeq2, fold change >= 2, FDR <= 0.01. WBPaper00056826:SGP_biased
  Genome-wide analysis of developmental and sex-regulated gene expression profile. self-organizing map cgc4489_group_18
  Proteins interacting with PQN-59 by Mass Spectroscopy. N.A. WBPaper00062143:PQN-59_interacting
  Transcripts that showed significantly increased expression in Day 8 adults comparing to in Day 1 adults in coelomocyte. t-test, fold change > 2, p-value < 0.01. WBPaper00062590:Aging_upregulated_coelomocyte

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00235339 16663347 16663616 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
270

1 Sequence Ontology Term