WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y102A5A.1.1 Sequence Name  Y102A5A.1.1
Length (nt)  4701   Chromosome Location  V: 16802872-16814957
Chromosome . Primary Identifier  V Chromosome Location . Start  16802872
Chromosome Location . End  16814957 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y102A5A.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013606 cand-1 Y102A5A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y102A5A.1 Y102A5A.1 3825   V: 16802874-16803011

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y102A5A.1.1 16802872 16814957 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon212878   140   V: 16802872-16803011 Caenorhabditis elegans
Exon212879   111   V: 16803504-16803614 Caenorhabditis elegans
Exon212880   255   V: 16804149-16804403 Caenorhabditis elegans
Exon212881   514   V: 16805074-16805587 Caenorhabditis elegans
Exon212882   884   V: 16806405-16807288 Caenorhabditis elegans
Exon212883   177   V: 16807957-16808133 Caenorhabditis elegans
Exon212884   154   V: 16808550-16808703 Caenorhabditis elegans
Exon212885   92   V: 16809202-16809293 Caenorhabditis elegans
Exon212886   638   V: 16810008-16810645 Caenorhabditis elegans
Exon212887   420   V: 16811525-16811944 Caenorhabditis elegans
Exon212888   370   V: 16812718-16813087 Caenorhabditis elegans
Exon212889   946   V: 16814012-16814957 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y102A5A.1.1 16802872 16814957 1

1 Sequence

Length
4701

1 Sequence Ontology Term

Identifier Name Description
transcript