WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F49A5.7.1 Sequence Name  F49A5.7.1
Length (nt)  1256   Chromosome Location  V: 16867678-16869840
Chromosome . Primary Identifier  V Chromosome Location . Start  16867678
Chromosome Location . End  16869840 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F49A5.7.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009859 clec-33 F49A5.7 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F49A5.7 F49A5.7 1236   V: 16867678-16868066

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F49A5.7.1 16867678 16869840 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon213001   389   V: 16867678-16868066 Caenorhabditis elegans
Exon213002   129   V: 16868113-16868241 Caenorhabditis elegans
Exon213003   145   V: 16868289-16868433 Caenorhabditis elegans
Exon213004   152   V: 16868477-16868628 Caenorhabditis elegans
Exon213005   54   V: 16868742-16868795 Caenorhabditis elegans
Exon213006   45   V: 16868895-16868939 Caenorhabditis elegans
Exon213007   45   V: 16869253-16869297 Caenorhabditis elegans
Exon213008   54   V: 16869435-16869488 Caenorhabditis elegans
Exon213009   69   V: 16869554-16869622 Caenorhabditis elegans
Exon213010   174   V: 16869667-16869840 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F49A5.7.1 16867678 16869840 -1

1 Sequence

Length
1256

1 Sequence Ontology Term

Identifier Name Description
transcript