WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00050962 Gene Name  F49A5.11
Sequence Name  ? F49A5.11 Organism  Caenorhabditis elegans
Automated Description  Is affected by dpy-21 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  :± Length (nt)  ? 346
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00050962

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

31 Allele

Public Name
gk963271
gk963489
gk963304
WBVar02123303
WBVar02124908
gk964050
WBVar02123708
gk963587
gk963588
WBVar02124497
WBVar02124626
WBVar02124059
gk962630
WBVar02122686
WBVar02124833
WBVar02124269
gk964156
gk964157
WBVar01635706
WBVar01747624
WBVar01809611
WBVar01275480
WBVar01991516
WBVar02043865
WBVar00042895
gk435547
gk725031
gk774797
WBVar02032435
gk259009

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00050962 16870071 16870416 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_16869841..16870070   230 V: 16869841-16870070 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in dpy-21(e428) comparing to in N2 during L3 stage. DESeq v1.6.3. Fold change > 1.5. WBPaper00050370:dpy-21(e428)_L3_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00050962 16870071 16870416 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
346

1 Sequence Ontology Term