WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014957 Gene Name  Y102A5C.30
Sequence Name  ? Y102A5C.30 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1; qui-1; and ogt-1 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 1087
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014957

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

40 Allele

Public Name
gk963271
gk963489
gk963304
WBVar02123303
gk964050
gk963587
gk963588
WBVar02124497
WBVar02124626
WBVar02124059
WBVar02124270
WBVar02121796
WBVar02123142
WBVar02124430
WBVar02122255
gk962630
WBVar02122686
WBVar02124833
WBVar02123852
WBVar01652800
WBVar01275930
gk259274
gk405822
gk259273
gk723031
gk259272
gk696446
gk649987
gk639989
WBVar01410813

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014957 17003980 17005066 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17005067..17005488   422 V: 17005067-17005488 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
  Up-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_upregulated
  Transcripts that showed significantly increased expression in ADL neurons of qui-1(db104) comparing to in N2 at day 1 adult stage. tximport 1.14.2 and DEseq2 1.26.0. Fold change > 2, FDR < 0.05. WBPaper00062520:qui-1(db104)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014957 17003980 17005066 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1087

1 Sequence Ontology Term