WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00050933 Gene Name  T19C9.9
Sequence Name  ? T19C9.9 Organism  Caenorhabditis elegans
Automated Description  Is affected by smn-1 and qui-1 based on RNA-seq studies. Is affected by triclosan based on microarray studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 302
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00050933

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

53 Allele

Public Name
gk963271
gk963489
gk963304
gk963637
WBVar02123303
gk964050
gk963587
gk963588
WBVar02124497
WBVar02124059
WBVar02124270
WBVar02122864
gk964305
WBVar02121796
WBVar02123142
WBVar02124430
WBVar02122255
gk962704
WBVar02122328
gk962630
gk963919
WBVar00091135
WBVar02121298
WBVar00091250
WBVar01653076
WBVar02123712
WBVar02124633
WBVar02124836
WBVar02121648
WBVar02122693

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00050933 17234329 17234630 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17234631..17235126   496 V: 17234631-17235126 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in smn-1(ok355) heterozygots using balancer hT2 comparing to in N2. DESeq v1.14.0, log2FC > 1, q <= 0.05. WBPaper00056809:smn-1(ok355)_upregulated
  Transcripts that showed significantly increased expression after 24 hour exposure to 20umol/l Triclosan at L4 larva stage. Fold change > 2, p-value < 0.05. WBPaper00051387:Triclosan_upregulated
  Transcripts that showed significantly increased expression in ADL neurons of qui-1(db104) comparing to in N2 at day 1 adult stage. tximport 1.14.2 and DEseq2 1.26.0. Fold change > 2, FDR < 0.05. WBPaper00062520:qui-1(db104)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00050933 17234329 17234630 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
302

1 Sequence Ontology Term