WormMine: Gene WBGene00014764

• WormBase Gene ID: WBGene00014764
• Gene Name: srz-46
• Sequence Name: F47H4.3
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in ASH and ASHL based on single-cell RNA-seq studies. Is affected by several genes including etr-1; mrps-5; and ogt-1 based on microarray and RNA-seq studies. Is affected by nitroguanidine based on microarray studies.
• Biotype: SO:0000336
• Genetic Position: V :12.8911 ±0.000822
• Length (nt): 1754

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00014764

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

80 Allele

• gk963271
• gk963489
• gk963304
• gk963637
• WBVar02123303
• gk964050
• gk963587
• gk963588
• WBVar02124497
• WBVar02124059
• WBVar02124270
• WBVar02122864
• WBVar02121796
• WBVar02123142
• WBVar02124430
• WBVar02122255
• gk962704
• WBVar02122328
• gk962630
• gk963919
• WBVar02121298
• gk962558
• WBVar02124375
• WBVar02079469
• WBVar02124912
• WBVar02124634
• WBVar02121653
• WBVar02123715
• WBVar02122698
• WBVar01653387

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00014764
• Start: 17369715
• End: 17371468
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_17371469..17371513
• Length (nt): 45
• Chromosome Location: V: 17371469-17371513
• Organism: Caenorhabditis elegans

8 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_upregulated_neural
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly altered expression after 24 hour exposure to nitroguanidine (NQ).	Multivariate permutation tests with random variance model implemented in BRB-Array Tools version 4.5 were performed to infer differentially expressed genes (DEGs). One thousand random permutations were computed per chemical class (i.e., a group of 16 arrays or samples). The confidence level of false discovery rate assessment was set at 80%, and the maximum allowed portion of false-positive genes was 10%.	WBPaper00055899:nitroguanidine_regulated
	Transcripts that showed significantly increased expression in eat-2(ad465) comparing to in N2.	Student's t-test, fold change > 2, p-value < 0.05.	WBPaper00055386:eat-2(ad465)_upregulated
	Transcripts that showed significantly increased expression in mrps-5(RNAi) comparing to in control animals.	Fold change > 4, p-value < 0.01	WBPaper00056330:mrps-5(RNAi)_upregulated
	Transcripts enriched in ASH according to single cell RNAseq.	Genes that pass the Bonferroni threshold for multiple comparisons (q < 0.05) are significantly enriched.	WBPaper00061651:ASH_enriched
	Transcripts of noncoding genes that showed significantly decreased expression in muscle.	DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed.	WBPaper00062325:muscle_depleted_noncoding-RNA
	Single-cell RNA-Seq cell group 47_1 expressed in neuron.	scVI 0.6.0	WBPaper00065841:47_1

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00014764
• Start: 17369715
• End: 17371468
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 1754

1 Sequence Ontology Term