WormMine: Gene WBGene00189966

• WormBase Gene ID: WBGene00189966
• Gene Name: rrn-4.15
• Sequence Name: T27C5.18
• Brief Description: rrn-4.15 (T27C5.18) encodes a 5s ribosomal RNA (rRNA), a component of the large ribosomal subunit and synthesised by RNA polymerase III; As this forms a major component of the ribosome, it is essential for all protein synthesis in the cell.
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by hpl-2 and adr-1 based on RNA-seq studies.
• Biotype: SO:0001637
• Genetic Position: V :12.8991±
• Length (nt): 118

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00189966

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:T27C5.18	T27C5.18	118	V: 17428879-17428996

Other

0 CDSs

1 RNAi Result

• WBRNAi00019318

35 Allele

• gk963271
• gk963489
• gk963304
• gk963637
• WBVar02123303
• gk964050
• gk963587
• gk963588
• WBVar02124497
• WBVar02124059
• WBVar02124270
• WBVar02122864
• WBVar02121796
• WBVar02123142
• WBVar02124430
• WBVar02122255
• gk962704
• WBVar02122328
• gk962630
• WBVar02121298
• gk962558
• WBVar02124375
• WBVar02079469
• WBVar00091136
• WBVar02121655
• WBVar02123144
• WBVar02124271
• WBVar02122865
• WBVar02121800
• WBVar02124498

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00189966
• Start: 17428879
• End: 17428996
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_17428997..17429700
• Length (nt): 704
• Chromosome Location: V: 17428997-17429700
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Coexpression clique No. 181, C10C5.2-Y58A7A.3, on the genome-wide coexpression clique map for the nematode GPL200 platform.	All available microarray datasets for the GPL200 platform (Affymetrix C. elegans Genome Array) were obtained from the GEO repository. This included 2243 individual microarray experiments. These were normalized against each other with the software RMAexpress (Bolstad, 2014). Based on these normalized values, Pearsons correlation coefficients were obtained for each probe-probe pair of the 22,620 probes represented on this array type. The resulting list of correlation coefficients was then ranked to generate the ranked coexpression database with information on each probe represented on the GPL200 platform.	WBPaper00061527:C10C5.2-Y58A7A.3
	Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_oocyte_depleted
	Transcripts depleted in purified oocyte P bodies comparing to in the whole animal.	DESeq2, FDR < 0.05, fold change > 2.	WBPaper00065975:P-body_vs_WholeAnimal_depleted
	Transcripts that showed significantly decreased expression in hpl-2(tm1489) comparing to in N2 animals.	DESeq2, adjusted p-value < 0.05, log2 fold change > 2 or < -2.	WBPaper00054493:hpl-2(tm1489)_downregulated
	Transcripts that showed significantly decreased expression in adr-1(tm668) comparing to in N2.	DESeq2, p-value < 0.05 and a fold enrichment log2fold > 0.5.	WBPaper00055226:adr-1(tm668)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00189966
• Start: 17428879
• End: 17428996
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 118

1 Sequence Ontology Term