WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005333 Gene Name  srh-114
Sequence Name  ? F08E10.8 Organism  Caenorhabditis elegans
Automated Description  Enriched in ADLL based on single-cell RNA-seq studies. Is affected by smn-1 and etr-1 based on RNA-seq studies. Biotype  SO:0000336
Genetic Position  V :12.9079 ±0.000136 Length (nt)  ? 1163
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005333

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

48 Allele

Public Name
gk963271
gk963489
gk963304
gk963637
WBVar02123303
gk964050
gk963587
gk963588
WBVar02124497
WBVar02124059
WBVar02124270
WBVar02122864
WBVar02121796
WBVar02123142
WBVar02124430
WBVar02122255
gk962704
WBVar02122328
gk962630
WBVar02121298
WBVar02122699
WBVar02121656
WBVar02124636
WBVar02123716
gk962558
WBVar02124375
WBVar02079469
WBVar00091136
WBVar00091251
WBVar02122039

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00005333 17472319 17473481 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17473482..17473998   517 V: 17473482-17473998 Caenorhabditis elegans

4 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
Osmotic stress Transcripts that showed significantly altered expression with 500 mM salt (NaCl) vs 100 mM salt when food was present DESeq(version 1.10.1), FDR < 0.05. WBPaper00050726:OsmoticStress_regulated_Food
  Transcripts that showed significantly increased expression in smn-1(ok355) heterozygots using balancer hT2 comparing to in N2. DESeq v1.14.0, log2FC > 1, q <= 0.05. WBPaper00056809:smn-1(ok355)_upregulated
  Single-cell RNA-Seq cell group 81_0 expressed in neuron. scVI 0.6.0 WBPaper00065841:81_0
  Transcripts that showed significantly decreased expression in etr-1(lq61) comparing to in N2 animals at L1 larva stage. DESeq2 (version 1.24.0). Transcripts with a false-discovery rate adjusted p-value less than 0.05 were considered significantly differentially expressed. WBPaper00062325:etr-1(lq61)_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00005333 17472319 17473481 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
1163

1 Sequence Ontology Term