WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00005792 Gene Name  srw-45
Sequence Name  ? K03D7.10 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1 based on microarray studies. Biotype  SO:0000336
Genetic Position  V :12.9173 ±0.000134 Length (nt)  ? 8325
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00005792

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

142 Allele

Public Name
gk963271
gk963489
gk963304
gk963637
WBVar02123303
gk964050
gk963587
gk963588
WBVar02124059
gk962704
gk962630
WBVar02122699
WBVar02121656
WBVar02124636
WBVar02123716
gk962558
WBVar02123305
WBVar02124375
WBVar02079469
WBVar01692749
WBVar01692750
WBVar01976902
WBVar02123307
WBVar01653538
WBVar01653537
WBVar02025236
gk949583
WBVar02076195
WBVar02076194
gk260419

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00005792 17511533 17519857 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_17510215..17511532   1318 V: 17510215-17511532 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00005792 17511533 17519857 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
8325

1 Sequence Ontology Term