WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06H5.6a.2 Sequence Name  C06H5.6a.2
Length (nt)  1789   Chromosome Location  V: 17879818-17888968
Chromosome . Primary Identifier  V Chromosome Location . Start  17879818
Chromosome Location . End  17888968 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06H5.6a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007394 C06H5.6 C06H5.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06H5.6a C06H5.6a 1671   V: 17879931-17880170

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06H5.6a.2 17879818 17888968 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon214752   353   V: 17879818-17880170 Caenorhabditis elegans
Exon214755   93   V: 17882396-17882488 Caenorhabditis elegans
Exon214758   301   V: 17882795-17883095 Caenorhabditis elegans
Exon214761   165   V: 17883582-17883746 Caenorhabditis elegans
Exon214764   257   V: 17884607-17884863 Caenorhabditis elegans
Exon214768   170   V: 17885043-17885212 Caenorhabditis elegans
Exon214770   104   V: 17887283-17887386 Caenorhabditis elegans
Exon214772   89   V: 17887439-17887527 Caenorhabditis elegans
Exon214774   129   V: 17888661-17888789 Caenorhabditis elegans
Exon214775   128   V: 17888841-17888968 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06H5.6a.2 17879818 17888968 -1

1 Sequence

Length
1789

1 Sequence Ontology Term

Identifier Name Description
transcript