WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y59A8B.22a.1 Sequence Name  Y59A8B.22a.1
Length (nt)  2452   Chromosome Location  V: 17968263-17980082
Chromosome . Primary Identifier  V Chromosome Location . Start  17968263
Chromosome Location . End  17980082 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y59A8B.22a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013354 snx-6 Y59A8B.22 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y59A8B.22a Y59A8B.22a 1437   V: 17969277-17969330

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y59A8B.22a.1 17968263 17980082 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon214951   1068   V: 17968263-17969330 Caenorhabditis elegans
Exon214955   150   V: 17970157-17970306 Caenorhabditis elegans
Exon214959   180   V: 17971402-17971581 Caenorhabditis elegans
Exon214964   122   V: 17973066-17973187 Caenorhabditis elegans
Exon214967   202   V: 17974737-17974938 Caenorhabditis elegans
Exon214970   124   V: 17976189-17976312 Caenorhabditis elegans
Exon214973   122   V: 17976991-17977112 Caenorhabditis elegans
Exon214977   132   V: 17977266-17977397 Caenorhabditis elegans
Exon214980   87   V: 17977457-17977543 Caenorhabditis elegans
Exon214981   265   V: 17979818-17980082 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y59A8B.22a.1 17968263 17980082 -1

1 Sequence

Length
2452

1 Sequence Ontology Term

Identifier Name Description
transcript