WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077646 Gene Name  Y51A2A.14
Sequence Name  ? Y51A2A.14 Organism  Caenorhabditis elegans
Automated Description  Is affected by ilc-17.1 based on RNA-seq studies. Is affected by Sirolimus based on microarray studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 939
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077646

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

27 Allele

Public Name
gk963271
gk963489
gk963304
gk963809
gk963637
gk962704
WBVar02121660
WBVar02120716
WBVar02124434
gk963970
gk963971
WBVar02120865
WBVar02124140
WBVar02121045
WBVar02123536
WBVar02121311
gk711390
WBVar02124840
WBVar00091143
tm10459
WBVar02122870
WBVar02124735
WBVar02120524
WBVar02122702
WBVar02122973
WBVar01521563
WBVar01924839

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00077646 18296428 18297366 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18295863..18296427   565 V: 18295863-18296427 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Genes from eat-2(ad465) animals with significantly increased expression after 72 hours of treatment on growth media with 10uM rapamycin in 2% DMSO. Analysis of gene expression data was carried out with the Affymetrix Transcriptome Analysis Console. Data preprocessing (using RMA normalization) and QC metrics were performed using Affymetrix Expression Console TM and manually inspected afterwards. Expression analysis was carried out for each two pairwise conditions. FDR statistical correction for multiple testing resulted in a slightly lower number of DEGs in most cases. P-value < 0.05 and fold change > 2.0 were used to determine differentially expressed genes. WBPaper00048989:eat-2(ad465)_rapamycin_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00077646 18296428 18297366 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
939

1 Sequence Ontology Term