WormMine: Gene WBGene00005409

• WormBase Gene ID: WBGene00005409
• Gene Name: srh-198
• Sequence Name: ZK262.13
• Organism: Caenorhabditis elegans
• Automated Description: Is affected by eat-2; adr-2; and ogt-1 based on RNA-seq studies. Is affected by Psoralens and allantoin based on RNA-seq studies.
• Biotype: SO:0000336
• Genetic Position: V :16.3986 ±0.011281
• Length (nt): 2145

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00005409

Genomics

0 Transcripts

Other

0 CDSs

0 RNAi Result

96 Allele

• gk963271
• gk963489
• gk963304
• gk963809
• gk963637
• gk962704
• gk963970
• gk963971
• gk964298
• gk961625
• gk906404
• gk423315
• gk861225
• gk902789
• gk838985
• gk450192
• gk327060
• gk420367
• gk350876
• gk672126
• gk506682
• gk846229
• gk582046
• gk757091
• WBVar01543205
• WBVar02025363
• WBVar01829209
• WBVar01829208
• WBVar01829212
• WBVar01829210

1 Chromosome

• WormBase ID: V
• Organism: Caenorhabditis elegans
• Length (nt): 20924180

1 Chromosome Location

• Feature . Primary Identifier: WBGene00005409
• Start: 18417749
• End: 18419893
• Strand: -1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrV_18417736..18417748
• Length (nt): 13
• Chromosome Location: V: 18417736-18417748
• Organism: Caenorhabditis elegans

5 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
	Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066485:ogt-1(ok1474)_upregulated_neuron
	Transcripts that showed significantly increased expression after animals were treated with 100uM Psora and 250uM Allantoin from day 1 to day 3 adult hermaphradite.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:Psora-Allantoin_upregulated
	Transcripts that showed significantly changed expression in 6-day post-L4 adult hermaphrodite comparing to in 1-day post L4 adult hermaphrodite animals.	Sleuth	WBPaper00051558:aging_regulated
	Transcripts that showed significantly decreased expression in eat-2(ad1116) comparing to in N2 at 3-days post L4 adult hermaphrodite animals.	DESeq2(v1.14.1), fold change > 2, p-value < 0.05	WBPaper00055354:eat-2(ad1116)_downregulated
	Transcripts that showed significantly increased expression in adr-2(ok735) and adr-2(gv42) comparing to in N2 at embryo stage.	DESeq FDR <= 0.05	WBPaper00056617:adr-2_upregulated_embryo_transcript

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00005409
• Start: 18417749
• End: 18419893
• Strand: -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 2145

1 Sequence Ontology Term