WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y51A2D.19c.1 Sequence Name  Y51A2D.19c.1
Length (nt)  3719   Chromosome Location  V: 18492261-18508212
Chromosome . Primary Identifier  V Chromosome Location . Start  18492261
Chromosome Location . End  18508212 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y51A2D.19c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004830 slo-1 Y51A2D.19 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y51A2D.19c Y51A2D.19c 3396   V: 18492306-18492460

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y51A2D.19c.1 18492261 18508212 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon215838   200   V: 18492261-18492460 Caenorhabditis elegans
Exon215853   211   V: 18493131-18493341 Caenorhabditis elegans
Exon215867   119   V: 18495017-18495135 Caenorhabditis elegans
Exon215880   103   V: 18495292-18495394 Caenorhabditis elegans
Exon215893   112   V: 18495556-18495667 Caenorhabditis elegans
Exon215906   323   V: 18495990-18496312 Caenorhabditis elegans
Exon215919   309   V: 18497242-18497550 Caenorhabditis elegans
Exon215932   309   V: 18498535-18498843 Caenorhabditis elegans
Exon215943   113   V: 18499582-18499694 Caenorhabditis elegans
Exon215958   236   V: 18501000-18501235 Caenorhabditis elegans
Exon215971   45   V: 18501935-18501979 Caenorhabditis elegans
Exon215986   39   V: 18502068-18502106 Caenorhabditis elegans
Exon215993   103   V: 18502793-18502895 Caenorhabditis elegans
Exon216013   85   V: 18504147-18504231 Caenorhabditis elegans
Exon216026   300   V: 18504832-18505131 Caenorhabditis elegans
Exon216039   283   V: 18505872-18506154 Caenorhabditis elegans
Exon216052   131   V: 18506376-18506506 Caenorhabditis elegans
Exon216065   195   V: 18506886-18507080 Caenorhabditis elegans
Exon216078   162   V: 18507569-18507730 Caenorhabditis elegans
Exon216100   341   V: 18507872-18508212 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y51A2D.19c.1 18492261 18508212 1

1 Sequence

Length
3719

1 Sequence Ontology Term

Identifier Name Description
transcript