WormMine

WS297

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y51A2D.19a.1 Sequence Name  Y51A2D.19a.1
Length (nt)  3733   Chromosome Location  V: 18492267-18508205
Chromosome . Primary Identifier  V Chromosome Location . Start  18492267
Chromosome Location . End  18508205 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y51A2D.19a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004830 slo-1 Y51A2D.19 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y51A2D.19a Y51A2D.19a 3423   V: 18492306-18492460

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y51A2D.19a.1 18492267 18508205 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon215842   194   V: 18492267-18492460 Caenorhabditis elegans
Exon215851   211   V: 18493131-18493341 Caenorhabditis elegans
Exon215865   119   V: 18495017-18495135 Caenorhabditis elegans
Exon215878   103   V: 18495292-18495394 Caenorhabditis elegans
Exon215891   112   V: 18495556-18495667 Caenorhabditis elegans
Exon215904   323   V: 18495990-18496312 Caenorhabditis elegans
Exon215917   309   V: 18497242-18497550 Caenorhabditis elegans
Exon215930   309   V: 18498535-18498843 Caenorhabditis elegans
Exon215949   113   V: 18500551-18500663 Caenorhabditis elegans
Exon215956   236   V: 18501000-18501235 Caenorhabditis elegans
Exon215969   45   V: 18501935-18501979 Caenorhabditis elegans
Exon215991   103   V: 18502793-18502895 Caenorhabditis elegans
Exon216005   66   V: 18503101-18503166 Caenorhabditis elegans
Exon216011   85   V: 18504147-18504231 Caenorhabditis elegans
Exon216024   300   V: 18504832-18505131 Caenorhabditis elegans
Exon216037   283   V: 18505872-18506154 Caenorhabditis elegans
Exon216050   131   V: 18506376-18506506 Caenorhabditis elegans
Exon216063   195   V: 18506886-18507080 Caenorhabditis elegans
Exon216076   162   V: 18507569-18507730 Caenorhabditis elegans
Exon216097   334   V: 18507872-18508205 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y51A2D.19a.1 18492267 18508205 1

1 Sequence

Length
3733

1 Sequence Ontology Term

Identifier Name Description
transcript