WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y51A2D.19f.1 Sequence Name  Y51A2D.19f.1
Length (nt)  3423   Chromosome Location  V: 18492306-18507934
Chromosome . Primary Identifier  V Chromosome Location . Start  18492306
Chromosome Location . End  18507934 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y51A2D.19f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004830 slo-1 Y51A2D.19 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y51A2D.19f Y51A2D.19f 3423   V: 18492306-18492460

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
Transcript:Y51A2D.19f.1 18492306 18507934 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon215789   155   V: 18492306-18492460 Caenorhabditis elegans
Exon215802   211   V: 18493131-18493341 Caenorhabditis elegans
Exon215816   119   V: 18495017-18495135 Caenorhabditis elegans
Exon215829   103   V: 18495292-18495394 Caenorhabditis elegans
Exon215842   112   V: 18495556-18495667 Caenorhabditis elegans
Exon215855   323   V: 18495990-18496312 Caenorhabditis elegans
Exon215868   309   V: 18497242-18497550 Caenorhabditis elegans
Exon215881   309   V: 18498535-18498843 Caenorhabditis elegans
Exon215892   113   V: 18499582-18499694 Caenorhabditis elegans
Exon215907   236   V: 18501000-18501235 Caenorhabditis elegans
Exon215920   45   V: 18501935-18501979 Caenorhabditis elegans
Exon215942   103   V: 18502793-18502895 Caenorhabditis elegans
Exon215954   66   V: 18503101-18503166 Caenorhabditis elegans
Exon215962   85   V: 18504147-18504231 Caenorhabditis elegans
Exon215975   300   V: 18504832-18505131 Caenorhabditis elegans
Exon215988   283   V: 18505872-18506154 Caenorhabditis elegans
Exon216001   131   V: 18506376-18506506 Caenorhabditis elegans
Exon216014   195   V: 18506886-18507080 Caenorhabditis elegans
Exon216027   162   V: 18507569-18507730 Caenorhabditis elegans
Exon216035   63   V: 18507872-18507934 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier 		Start End Strand
Transcript:Y51A2D.19f.1 18492306 18507934 1

1 Sequence

Length
3423

1 Sequence Ontology Term

Identifier Name Description
transcript