WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y51A2D.19d.1 Sequence Name  Y51A2D.19d.1
Length (nt)  3747   Chromosome Location  V: 18492306-18508198
Chromosome . Primary Identifier  V Chromosome Location . Start  18492306
Chromosome Location . End  18508198 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y51A2D.19d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004830 slo-1 Y51A2D.19 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y51A2D.19d Y51A2D.19d 3483   V: 18492306-18492460

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y51A2D.19d.1 18492306 18508198 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon215796   155   V: 18492306-18492460 Caenorhabditis elegans
Exon215800   211   V: 18493131-18493341 Caenorhabditis elegans
Exon215814   119   V: 18495017-18495135 Caenorhabditis elegans
Exon215827   103   V: 18495292-18495394 Caenorhabditis elegans
Exon215840   112   V: 18495556-18495667 Caenorhabditis elegans
Exon215853   323   V: 18495990-18496312 Caenorhabditis elegans
Exon215866   309   V: 18497242-18497550 Caenorhabditis elegans
Exon215879   309   V: 18498535-18498843 Caenorhabditis elegans
Exon215890   113   V: 18499582-18499694 Caenorhabditis elegans
Exon215905   236   V: 18501000-18501235 Caenorhabditis elegans
Exon215918   45   V: 18501935-18501979 Caenorhabditis elegans
Exon215928   60   V: 18502047-18502106 Caenorhabditis elegans
Exon215940   103   V: 18502793-18502895 Caenorhabditis elegans
Exon215952   66   V: 18503101-18503166 Caenorhabditis elegans
Exon215960   85   V: 18504147-18504231 Caenorhabditis elegans
Exon215973   300   V: 18504832-18505131 Caenorhabditis elegans
Exon215986   283   V: 18505872-18506154 Caenorhabditis elegans
Exon215999   131   V: 18506376-18506506 Caenorhabditis elegans
Exon216012   195   V: 18506886-18507080 Caenorhabditis elegans
Exon216025   162   V: 18507569-18507730 Caenorhabditis elegans
Exon216042   327   V: 18507872-18508198 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y51A2D.19d.1 18492306 18508198 1

1 Sequence

Length
3747

1 Sequence Ontology Term

Identifier Name Description
transcript