WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00219625 Gene Name  linc-168
Sequence Name  ? Y69H2.27 Organism  Caenorhabditis elegans
Automated Description  Enriched in anchor cell based on RNA-seq studies. Is affected by camt-1 based on RNA-seq studies. Biotype  SO:0001641
Genetic Position  V :17.1509± Length (nt)  ? 386
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00219625

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y69H2.27 Y69H2.27 134   V: 18649942-18650327
 

Other

0 CDSs

0 RNAi Result

25 Allele

Public Name
gk963271
gk963489
gk963304
gk963809
gk963637
gk963292
gk963480
gk859697
gk546839
gk652917
tm11375
WBVar01638583
WBVar01638584
gk964365
otn7848
otn7846
otn7847
WBVar00224472
WBVar00224471
WBVar01596989
tm12467
WBVar01749890
WBVar01749891
WBVar02124436
WBVar02079534

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00219625 18649942 18650327 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18648390..18649941   1552 V: 18648390-18649941 Caenorhabditis elegans

2 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly altered expression at URX, AQR, and PQR neurons in camt-1(ok515) animals comparing to in wild type AX1888-1 strain. RNA-seq data were mapped using PRAGUI - a Python 3-based pipeline for RNA-seq data analysis. WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
  Transcripts enriched in invading anchor cells comparing to in whole animal. DESeq2v.1.30.1. fold change >= 2, FDR < 0.05 WBPaper00065258:anchor-cell_enriched

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00219625 18649942 18650327 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
386

1 Sequence Ontology Term