WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00077657 Gene Name  F11D11.18
Sequence Name  ? F11D11.18 Organism  Caenorhabditis elegans
Automated Description  Is affected by several genes including clk-1; glh-4; and glh-1 based on microarray and RNA-seq studies. Biotype  SO:0000336
Genetic Position  Length (nt)  ? 245
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00077657

Genomics

0 Transcripts

 

Other

0 CDSs

0 RNAi Result

37 Allele

Public Name
gk963271
gk963489
gk963304
gk963809
gk963637
WBVar02124841
gk963292
WBVar02120719
gk962724
WBVar02120528
gk963480
WBVar02123778
WBVar02122704
gk964205
WBVar02124975
WBVar02122873
WBVar00091258
gk928699
WBVar02025567
h17663
WBVar02078856
WBVar01909177
WBVar01909178
WBVar00224632
gk263141
gk263139
gk263140
WBVar01522285
WBVar01899834
WBVar02119718

1 Chromosome

WormBase ID Organism Length (nt)
V Caenorhabditis elegans 20924180  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00077657 18769242 18769486 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrV_18768415..18769241   827 V: 18768415-18769241 Caenorhabditis elegans

3 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in animals lacking P granules by RNAi experiments targeting pgl-1, pgl-3, glh-1 and glh-4, and unc-119-GFP(-), comparing to in control animals, at 2-day post L4 adult hermaphrodite stage. DESeq2, Benjamini-Hochberg multiple hypothesis corrected p-value < 0.05 and fold change > 2. WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
  Genes found to be regulated by low-copy overexpression of sir-2.1 with p < 0.014. N.A. WBPaper00026929:sir-2.1_overexpression_regulated
  Down-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_downregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00077657 18769242 18769486 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
245

1 Sequence Ontology Term